diff --git a/core/ble/build.gradle.kts b/core/ble/build.gradle.kts
index 337435c8e5..b40d0c5c5d 100644
--- a/core/ble/build.gradle.kts
+++ b/core/ble/build.gradle.kts
@@ -58,6 +58,7 @@ tasks.flatpakGradleGenerator {
             "androidHostTestCompileClasspath",
             "androidHostTestLintChecksClasspath",
             "androidHostTestRuntimeClasspath",
+            "kotlinNativeBundleConfiguration",
             "testCompileClasspath",
             "testRuntimeClasspath",
         ),
diff --git a/core/common/build.gradle.kts b/core/common/build.gradle.kts
index 11b33ca8f9..1466b1051d 100644
--- a/core/common/build.gradle.kts
+++ b/core/common/build.gradle.kts
@@ -49,6 +49,7 @@ tasks.flatpakGradleGenerator {
             "androidHostTestCompileClasspath",
             "androidHostTestLintChecksClasspath",
             "androidHostTestRuntimeClasspath",
+            "kotlinNativeBundleConfiguration",
             "testCompileClasspath",
             "testRuntimeClasspath",
         ),
diff --git a/core/database/build.gradle.kts b/core/database/build.gradle.kts
index b5a8617dcf..1b7766e8c2 100644
--- a/core/database/build.gradle.kts
+++ b/core/database/build.gradle.kts
@@ -93,6 +93,7 @@ tasks.flatpakGradleGenerator {
             "androidDeviceTestLintChecksClasspath",
             "androidDeviceTestCompileClasspath",
             "androidCompileClasspath",
+            "kotlinNativeBundleConfiguration",
             "testCompileClasspath",
             "testRuntimeClasspath",
         ),
diff --git a/core/model/build.gradle.kts b/core/model/build.gradle.kts
index 3c0dc95bd1..e20f9c9e21 100644
--- a/core/model/build.gradle.kts
+++ b/core/model/build.gradle.kts
@@ -85,6 +85,7 @@ tasks.flatpakGradleGenerator {
             "androidDeviceTestLintChecksClasspath",
             "androidDeviceTestCompileClasspath",
             "androidCompileClasspath",
+            "kotlinNativeBundleConfiguration",
             "testCompileClasspath",
             "testRuntimeClasspath",
         ),
diff --git a/core/navigation/build.gradle.kts b/core/navigation/build.gradle.kts
index 633b86f8fa..ad091e2fe7 100644
--- a/core/navigation/build.gradle.kts
+++ b/core/navigation/build.gradle.kts
@@ -50,6 +50,7 @@ tasks.flatpakGradleGenerator {
             "androidDeviceTestLintChecksClasspath",
             "androidDeviceTestCompileClasspath",
             "androidCompileClasspath",
+            "kotlinNativeBundleConfiguration",
             "testCompileClasspath",
             "testRuntimeClasspath",
         ),
diff --git a/core/proto/build.gradle.kts b/core/proto/build.gradle.kts
index 683514a3c8..00bb630b22 100644
--- a/core/proto/build.gradle.kts
+++ b/core/proto/build.gradle.kts
@@ -137,5 +137,11 @@ publishing {
 tasks.flatpakGradleGenerator {
     outputFile = file("../../flatpak-sources-core-proto.json")
     downloadDirectory.set("./offline-repository")
-    excludeConfigurations.set(listOf("testCompileClasspath", "testRuntimeClasspath"))
+    excludeConfigurations.set(
+        listOf(
+            "kotlinNativeBundleConfiguration",
+            "testCompileClasspath",
+            "testRuntimeClasspath",
+        ),
+    )
 }
diff --git a/feature/messaging/build.gradle.kts b/feature/messaging/build.gradle.kts
index 39bcfb4614..828857ece7 100644
--- a/feature/messaging/build.gradle.kts
+++ b/feature/messaging/build.gradle.kts
@@ -80,6 +80,7 @@ tasks.flatpakGradleGenerator {
             "androidHostTestCompileClasspath",
             "androidHostTestLintChecksClasspath",
             "androidHostTestRuntimeClasspath",
+            "kotlinNativeBundleConfiguration",
             "testCompileClasspath",
             "testRuntimeClasspath",
         ),