common: Check core.add-remotes-config-dir before modifying remote config

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See the comment added in the code for an explanation: if
core.add-remotes-config-dir=true, we must avoid adding configuration in
both /etc/flatpak/remotes.d/ and /ostree/repo/config. In lieu of
actually supporting adding the configuration in the right place, bail
early to avoid leaving partial configuration in the wrong place.

Signed-off-by: Philip Withnall <withnall@endlessm.com>

https://github.com/flatpak/flatpak/issues/1665

Closes: #1666
Approved by: alexlarsson

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