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We now have subprojects for a few dependencies. libglnx and variant-schema-compiler used to be git subtrees and we recommend distributions to use those vendored dependencies. We turned them into meson wraps, which means they are no longer vendored in. We can include them with --include-subprojects, but then we have to make sure that the subprojects we recommend to use from the system (bwrap and xdg-dbus-proxy) are disabled.