diff --git a/packages/insomnia/src/entry.preload.ts b/packages/insomnia/src/entry.preload.ts
index af3298e0a2..a4319e6c75 100644
--- a/packages/insomnia/src/entry.preload.ts
+++ b/packages/insomnia/src/entry.preload.ts
@@ -196,7 +196,7 @@ const git: GitServiceAPI = {
   pullFromGitRemote: options => invokeWithNormalizedError('git.pullFromGitRemote', options),
   continueMerge: options => invokeWithNormalizedError('git.continueMerge', options),
   discardChanges: options => invokeWithNormalizedError('git.discardChanges', options),
-  abortMerge: () => invokeWithNormalizedError('git.abortMerge'),
+  abortMerge: options => invokeWithNormalizedError('git.abortMerge', options),
   gitStatus: options => invokeWithNormalizedError('git.gitStatus', options),
   diff: () => invokeWithNormalizedError('git.diff'),
   multipleCommitToGitRepo: options => invokeWithNormalizedError('git.multipleCommitToGitRepo', options),
@@ -265,7 +265,8 @@ const main: Window['main'] = {
     requestId: string,
     authentication: AuthTypeOAuth2,
     forceRefresh?: boolean,
-  ): Promise<OAuth2Token | undefined> => invokeWithNormalizedError('getOAuth2Token', requestId, authentication, forceRefresh),
+  ): Promise<OAuth2Token | undefined> =>
+    invokeWithNormalizedError('getOAuth2Token', requestId, authentication, forceRefresh),
   insecureReadFile: options => invokeWithNormalizedError('insecureReadFile', options),
   insecureReadFileWithEncoding: options => invokeWithNormalizedError('insecureReadFileWithEncoding', options),
   secureReadFile: options => invokeWithNormalizedError('secureReadFile', options),
diff --git a/packages/insomnia/src/main/git-service.ts b/packages/insomnia/src/main/git-service.ts
index 00934e9089..a2b84db99c 100644
--- a/packages/insomnia/src/main/git-service.ts
+++ b/packages/insomnia/src/main/git-service.ts
@@ -61,7 +61,7 @@ import GitVCS, {
 import { MemClient } from '../sync/git/mem-client';
 import { NeDBClient } from '../sync/git/ne-db-client';
 import { projectRoutableFSClient } from '../sync/git/project-routable-fs-client';
-import { repoFileWatcherRegistry } from '../sync/git/repo-file-watcher';
+import { createElectronNotifier, RepoFileWatcherRegistry, type WatcherNotifier } from '../sync/git/repo-file-watcher';
 import { routableFSClient } from '../sync/git/routable-fs-client';
 import { shallowClone } from '../sync/git/shallow-clone';
 import type { AutoResolvedConflict, MergeConflict } from '../sync/types';
@@ -72,6 +72,35 @@ import { ipcMainHandle } from './ipc/electron';
 // Initialize Git Remote Providers on module load
 initializeGitRemoteProviders();
 
+/**
+ * Set of repo IDs for which conflict problems should be suppressed in the
+ * file-problems-changed IPC broadcast.  Active while the user is resolving
+ * conflicts via SyncMergeModal so the generic "CLI conflict" blocking modal
+ * does not appear on top of the interactive resolver.
+ */
+const suppressedConflictRepos = new Set<string>();
+
+const _electronNotifier = createElectronNotifier();
+const conflictFilteringNotifier: WatcherNotifier = {
+  onDbSynced: () => _electronNotifier.onDbSynced(),
+  onProblemsChanged: payload => {
+    _electronNotifier.onProblemsChanged({
+      ...payload,
+      conflictsSuppressed: suppressedConflictRepos.has(payload.repoId),
+    });
+  },
+};
+
+const repoFileWatcherRegistry = new RepoFileWatcherRegistry(conflictFilteringNotifier);
+
+function suppressConflictProblems(repoId: string): void {
+  suppressedConflictRepos.add(repoId);
+}
+
+function clearConflictSuppression(repoId: string): void {
+  suppressedConflictRepos.delete(repoId);
+}
+
 type PushPull = 'push' | 'pull';
 type VCSAction =
   | PushPull
@@ -1543,6 +1572,7 @@ export const resetGitRepoAction = async ({ projectId, workspaceId }: { projectId
   await services.gitRepository.remove(repo);
   // Stop the file watcher for this repository (project-scoped flow only).
   repoFileWatcherRegistry.stopWatcher(repo._id);
+  clearConflictSuppression(repo._id);
 
   await database.flushChanges(flushId);
 
@@ -1982,6 +2012,7 @@ export const mergeGitBranch = async ({
   const bufferId = await database.bufferChanges();
 
   try {
+    suppressConflictProblems(gitRepository._id);
     await GitVCS.merge({
       theirsBranch,
       allowUncommittedChangesBeforeMerge,
@@ -1993,6 +2024,7 @@ export const mergeGitBranch = async ({
     // Import all YAML files from disk into the DB after merge + checkout
     const gitRepoId = gitRepository._id;
     await repoFileWatcherRegistry.importAllFiles(gitRepoId);
+    clearConflictSuppression(gitRepository._id);
 
     trackSegmentEvent(SegmentEvent.vcsAction, {
       ...vcsSegmentEventProperties('git', 'merge_branch'),
@@ -2013,8 +2045,10 @@ export const mergeGitBranch = async ({
     return {};
   } catch (err) {
     if (err instanceof MergeConflictError) {
+      // Keep suppression active — user will resolve via SyncMergeModal.
       return err.data;
     }
+    clearConflictSuppression(gitRepository._id);
     let errorMessage = getErrorMessage(err);
 
     if (err instanceof Errors.HttpError) {
@@ -2231,9 +2265,12 @@ export async function fetchGitRemoteBranches({
 }
 
 export async function pullFromGitRemote({ projectId, workspaceId }: { projectId: string; workspaceId?: string }) {
+  let repoId: string | null = null;
   try {
     await assertBranchOnOrigin('pull');
     const gitRepository = await getGitRepository({ projectId, workspaceId });
+    repoId = gitRepository._id;
+    suppressConflictProblems(repoId);
     invariant(gitRepository.credentialsId, 'Git Credentials ID is required');
     const credentials = await services.gitCredentials.getById(gitRepository.credentialsId);
     invariant(credentials, 'Git Credentials not found');
@@ -2243,6 +2280,7 @@ export async function pullFromGitRemote({ projectId, workspaceId }: { projectId:
 
     // Import all YAML files from disk into the DB after pull
     await repoFileWatcherRegistry.importAllFiles(gitRepository._id);
+    clearConflictSuppression(repoId);
 
     trackSegmentEvent(SegmentEvent.vcsAction, {
       ...vcsSegmentEventProperties('git', 'pull'),
@@ -2266,9 +2304,13 @@ export async function pullFromGitRemote({ projectId, workspaceId }: { projectId:
     };
   } catch (err: unknown) {
     if (err instanceof MergeConflictError) {
+      // Keep suppression active — user will resolve via SyncMergeModal.
+      // clearConflictSuppression is called by continueMerge or abortMergeAction.
       return err.data;
     }
 
+    if (repoId) clearConflictSuppression(repoId);
+
     if (
       err instanceof Errors.UserCanceledError ||
       (err instanceof Errors.HttpError && (err.data.statusCode === 401 || err.data.statusCode === 403))
@@ -2334,6 +2376,9 @@ export const continueMerge = async ({
 
     // Import all YAML files from disk into the DB after merge resolution
     await repoFileWatcherRegistry.importAllFiles(gitRepository._id);
+    // Files are clean now — lift the conflict suppression so any remaining
+    // issues (parse errors etc.) are reported normally.
+    clearConflictSuppression(gitRepository._id);
 
     const log = (await GitVCS.log({ depth: 1 })) || [];
 
@@ -2414,7 +2459,9 @@ export const discardChangesAction = async ({
   }
 };
 
-export const abortMergeAction = async () => {
+export const abortMergeAction = async ({ projectId, workspaceId }: { projectId: string; workspaceId?: string }) => {
+  const gitRepository = await getGitRepository({ projectId, workspaceId });
+  clearConflictSuppression(gitRepository._id);
   return GitVCS.abortMerge();
 };
 
@@ -2869,7 +2916,9 @@ export async function runAllGitRepoMigrations(): Promise<MigrationSummary> {
 
   const ts = () => new Date().toISOString();
   const projectList = gitProjects.map(p => `"${p.name}"`).join(', ');
-  logs.push(`${ts()} [INFO] Starting migration v${CURRENT_MIGRATION_VERSION} for ${gitProjects.length} repo(s): ${projectList}`);
+  logs.push(
+    `${ts()} [INFO] Starting migration v${CURRENT_MIGRATION_VERSION} for ${gitProjects.length} repo(s): ${projectList}`,
+  );
 
   await Promise.all(
     gitProjects.map(async project => {
@@ -3036,7 +3085,7 @@ export const registerGitServiceAPI = () => {
   ipcMainHandle('git.discardChanges', (_, options: Parameters<typeof discardChangesAction>[0]) =>
     discardChangesAction(options),
   );
-  ipcMainHandle('git.abortMerge', _ => abortMergeAction());
+  ipcMainHandle('git.abortMerge', (_, options: Parameters<typeof abortMergeAction>[0]) => abortMergeAction(options));
   ipcMainHandle('git.gitStatus', (_, options: Parameters<typeof gitStatusAction>[0]) => gitStatusAction(options));
   ipcMainHandle('git.diff', () => diff());
   ipcMainHandle('git.stageChanges', (_, options: Parameters<typeof stageChangesAction>[0]) =>
diff --git a/packages/insomnia/src/routes/organization.$organizationId.project.$projectId.workspace.$workspaceId.tsx b/packages/insomnia/src/routes/organization.$organizationId.project.$projectId.workspace.$workspaceId.tsx
index e178001938..95879eda45 100644
--- a/packages/insomnia/src/routes/organization.$organizationId.project.$projectId.workspace.$workspaceId.tsx
+++ b/packages/insomnia/src/routes/organization.$organizationId.project.$projectId.workspace.$workspaceId.tsx
@@ -401,7 +401,7 @@ const Component = () => {
     projectId: string;
     workspaceId: string;
   };
-  const { issuesByWorkspaceId } = useGitFileIssues();
+  const { issuesByWorkspaceId, conflictsSuppressed } = useGitFileIssues();
   const currentIssue = issuesByWorkspaceId[workspaceId];
 
   const handleBackToList = () => {
@@ -414,7 +414,9 @@ const Component = () => {
   };
 
   const modalText = currentIssue ? workspaceFileIssueModalText[currentIssue.kind] : null;
-  const isIssueModalOpen = Boolean(currentIssue && modalText);
+  const isIssueModalOpen = Boolean(
+    currentIssue && modalText && !(currentIssue.kind === 'conflict' && conflictsSuppressed),
+  );
 
   return (
     <div className="h-full w-full overflow-hidden" data-testid="workspace-page">
diff --git a/packages/insomnia/src/sync/git/repo-file-watcher.ts b/packages/insomnia/src/sync/git/repo-file-watcher.ts
index 13b90cc9be..4bba7f51fc 100644
--- a/packages/insomnia/src/sync/git/repo-file-watcher.ts
+++ b/packages/insomnia/src/sync/git/repo-file-watcher.ts
@@ -73,6 +73,8 @@ export interface FileProblemsChangedPayload {
   repoId: string;
   problems: FileIssue[];
   workspaceIssues: WorkspaceFileIssue[];
+  /** True when the main process is suppressing conflict display (e.g. SyncMergeModal is open). */
+  conflictsSuppressed: boolean;
 }
 
 /** Compute a SHA-256 hex digest of a string. */
@@ -792,6 +794,7 @@ class RepoFileWatcher {
       repoId: this.repoId,
       problems: this.getProblems(),
       workspaceIssues: this.getWorkspaceIssues(),
+      conflictsSuppressed: false,
     });
   }
 }
@@ -900,7 +903,7 @@ export class RepoFileWatcherRegistry {
 }
 
 /** Default notifier that broadcasts to all Electron BrowserWindows. */
-function createElectronNotifier(): WatcherNotifier {
+export function createElectronNotifier(): WatcherNotifier {
   return {
     onDbSynced: () => {
       for (const w of BrowserWindow.getAllWindows()) {
@@ -914,5 +917,3 @@ function createElectronNotifier(): WatcherNotifier {
     },
   };
 }
-
-export const repoFileWatcherRegistry = new RepoFileWatcherRegistry(createElectronNotifier());
diff --git a/packages/insomnia/src/ui/components/dropdowns/git-project-sync-dropdown.tsx b/packages/insomnia/src/ui/components/dropdowns/git-project-sync-dropdown.tsx
index f365f628bf..2bce4ad79c 100644
--- a/packages/insomnia/src/ui/components/dropdowns/git-project-sync-dropdown.tsx
+++ b/packages/insomnia/src/ui/components/dropdowns/git-project-sync-dropdown.tsx
@@ -459,6 +459,7 @@ export const GitProjectSyncDropdown: FC<Props> = ({ gitRepository, activeProject
               });
           },
           onCancelUnresolved: () => {
+            window.main.git.abortMerge({ projectId });
             closeGitProjectStagingModalRef.current?.();
             setIsPulling(false);
             showToast({
diff --git a/packages/insomnia/src/ui/components/dropdowns/workspace-sync-dropdown.tsx b/packages/insomnia/src/ui/components/dropdowns/workspace-sync-dropdown.tsx
index 07cff3f43f..a325f37670 100644
--- a/packages/insomnia/src/ui/components/dropdowns/workspace-sync-dropdown.tsx
+++ b/packages/insomnia/src/ui/components/dropdowns/workspace-sync-dropdown.tsx
@@ -22,20 +22,24 @@ export const WorkspaceSyncDropdown: FC = () => {
   }
 
   const isLocalProject =
-    !models.project.isRemoteProject(activeProject) && !activeWorkspaceMeta?.gitRepositoryId && !models.project.isGitProject(activeProject);
+    !models.project.isRemoteProject(activeProject) &&
+    !activeWorkspaceMeta?.gitRepositoryId &&
+    !models.project.isGitProject(activeProject);
 
   if (isLocalProject) {
     return <LocalProjectBar />;
   }
 
-  const shouldShowCloudSyncDropdown = models.project.isRemoteProject(activeProject) && !activeWorkspaceMeta?.gitRepositoryId;
+  const shouldShowCloudSyncDropdown =
+    models.project.isRemoteProject(activeProject) && !activeWorkspaceMeta?.gitRepositoryId;
 
   if (shouldShowCloudSyncDropdown) {
     return <SyncDropdown key={activeWorkspace?._id} workspace={activeWorkspace} project={activeProject} />;
   }
 
   const shouldShowGitSyncDropdown =
-    features.gitSync.enabled && (activeWorkspaceMeta?.gitRepositoryId || !models.project.isRemoteProject(activeProject));
+    features.gitSync.enabled &&
+    (activeWorkspaceMeta?.gitRepositoryId || !models.project.isRemoteProject(activeProject));
   if (shouldShowGitSyncDropdown) {
     if (models.project.isGitProject(activeProject)) {
       return (
diff --git a/packages/insomnia/src/ui/components/modals/git-project-branches-modal.tsx b/packages/insomnia/src/ui/components/modals/git-project-branches-modal.tsx
index 987df57667..50a1ae5b3d 100644
--- a/packages/insomnia/src/ui/components/modals/git-project-branches-modal.tsx
+++ b/packages/insomnia/src/ui/components/modals/git-project-branches-modal.tsx
@@ -166,7 +166,7 @@ const LocalBranchItem = ({
                       },
                       onCancelUnresolved: () => {
                         // user aborted merge
-                        window.main.git.abortMerge();
+                        window.main.git.abortMerge({ projectId });
                         // TODO: the abortMerge method provided by isomorphic-git is unreliable
                         // clean up any partial merges here
                         reject(
diff --git a/packages/insomnia/src/ui/hooks/use-git-file-issues.ts b/packages/insomnia/src/ui/hooks/use-git-file-issues.ts
index 3fdb898dc3..ab7842125d 100644
--- a/packages/insomnia/src/ui/hooks/use-git-file-issues.ts
+++ b/packages/insomnia/src/ui/hooks/use-git-file-issues.ts
@@ -19,6 +19,7 @@ const mapIssuesByWorkspaceId = (issues: WorkspaceFileIssue[]) => {
 
 export interface GitFileIssuesValue {
   issuesByWorkspaceId: Record<string, WorkspaceFileIssue>;
+  conflictsSuppressed: boolean;
 }
 
 const GitFileIssuesContext = createContext<GitFileIssuesValue | undefined>(undefined);
@@ -43,6 +44,7 @@ export const useProjectGitFileIssues = ({
   gitRepositoryId?: string | null;
 }): GitFileIssuesValue => {
   const [issuesByWorkspaceId, setIssuesByWorkspaceId] = useState<Record<string, WorkspaceFileIssue>>({});
+  const [conflictsSuppressed, setConflictsSuppressed] = useState(false);
 
   const loadIssues = useCallback(async () => {
     if (!projectId || !gitRepositoryId) {
@@ -76,6 +78,7 @@ export const useProjectGitFileIssues = ({
         return;
       }
 
+      setConflictsSuppressed(payload.conflictsSuppressed);
       setIssuesByWorkspaceId(mapIssuesByWorkspaceId(payload.workspaceIssues));
     });
   }, [gitRepositoryId]);
@@ -83,7 +86,8 @@ export const useProjectGitFileIssues = ({
   return useMemo<GitFileIssuesValue>(
     () => ({
       issuesByWorkspaceId,
+      conflictsSuppressed,
     }),
-    [issuesByWorkspaceId],
+    [issuesByWorkspaceId, conflictsSuppressed],
   );
 };