* This is 99% mechanical:
Extracted repo.Repository interface that only exposes high-level object and manifest management methods, but not blob nor content management.
Renamed old *repo.Repository to *repo.DirectRepository
Reviewed codebase to only depend on repo.Repository as much as possible, but added way for low-level CLI commands to use DirectRepository.
* PR fixes
- Use it to compare the entry attributes for all entry types.
Allows comparing differences in file attributes among the
contents of two directories. This is useful for verifying
restored contents in end-to-end tests.
- Print message about modified entries only when both entries
are files and they are being compared.
