refactor: rename directories and unify command packages per domain (#10993)

- Rename `installing/core` → `installing/deps-installer` and `installing/headless` → `installing/deps-restorer` for clearer naming
- Rename all `plugin-commands-*` directories to use `-commands` suffix convention
- Merge multiple command packages per domain into a single `commands/` directory (one commands package per domain rule):
  - `building/{build-commands,policy-commands}` → `building/commands`
  - `deps/compliance/{audit-commands,licenses-commands,sbom-commands}` → `deps/compliance/commands`
  - `deps/inspection/{listing-commands,outdated-commands}` → `deps/inspection/commands`
  - `store/{store-commands,inspecting-commands}` → `store/commands`
  - `releasing/{publish-commands,deploy-commands}` → `releasing/commands`
  - `cli/{completion-commands,doctor-commands}` → `cli/commands`
  - `engine/pm/{self-updater-commands,setup-commands}` → `engine/pm/commands`
  - `engine/runtime/{runtime-commands,env-commands}` → `engine/runtime/commands`
  - `cache/cache-commands` → `cache/commands`
- Fix relative paths in merged test files (pnpmBin, __typings__ references)
- Update jest config to ignore `utils/` dirs at any nesting depth under `test/`
- Fix stale package names in changeset files

store/commands/package.json

@@ -0,0 +1,92 @@
+{
+  "name": "@pnpm/store.commands",
+  "version": "1000.0.0",
+  "description": "Commands for controlling and inspecting the store",
+  "keywords": [
+    "pnpm",
+    "pnpm11",
+    "scripts"
+  ],
+  "license": "MIT",
+  "funding": "https://opencollective.com/pnpm",
+  "repository": "https://github.com/pnpm/pnpm/tree/main/store/commands",
+  "homepage": "https://github.com/pnpm/pnpm/tree/main/store/commands#readme",
+  "bugs": {
+    "url": "https://github.com/pnpm/pnpm/issues"
+  },
+  "type": "module",
+  "main": "lib/index.js",
+  "types": "lib/index.d.ts",
+  "exports": {
+    ".": "./lib/index.js"
+  },
+  "files": [
+    "lib",
+    "!*.map"
+  ],
+  "scripts": {
+    "lint": "eslint \"src/**/*.ts\" \"test/**/*.ts\"",
+    "_test": "cross-env NODE_OPTIONS=\"$NODE_OPTIONS --experimental-vm-modules\" jest",
+    "test": "pnpm run compile && pnpm run _test",
+    "prepublishOnly": "pnpm run compile",
+    "compile": "tsgo --build && pnpm run lint --fix"
+  },
+  "dependencies": {
+    "@pnpm/cli-utils": "workspace:*",
+    "@pnpm/client": "workspace:*",
+    "@pnpm/config": "workspace:*",
+    "@pnpm/crypto.integrity": "workspace:*",
+    "@pnpm/dependency-path": "workspace:*",
+    "@pnpm/error": "workspace:*",
+    "@pnpm/get-context": "workspace:*",
+    "@pnpm/global.packages": "workspace:*",
+    "@pnpm/graceful-fs": "workspace:*",
+    "@pnpm/lockfile.types": "workspace:*",
+    "@pnpm/lockfile.utils": "workspace:*",
+    "@pnpm/normalize-registries": "workspace:*",
+    "@pnpm/object.key-sorting": "workspace:*",
+    "@pnpm/parse-wanted-dependency": "workspace:*",
+    "@pnpm/store-connection-manager": "workspace:*",
+    "@pnpm/store-controller-types": "workspace:*",
+    "@pnpm/store-path": "workspace:*",
+    "@pnpm/store.cafs": "workspace:*",
+    "@pnpm/store.index": "workspace:*",
+    "@pnpm/types": "workspace:*",
+    "@pnpm/util.lex-comparator": "catalog:",
+    "archy": "catalog:",
+    "chalk": "catalog:",
+    "dint": "catalog:",
+    "p-filter": "catalog:",
+    "ramda": "catalog:",
+    "render-help": "catalog:"
+  },
+  "peerDependencies": {
+    "@pnpm/logger": "catalog:"
+  },
+  "devDependencies": {
+    "@jest/globals": "catalog:",
+    "@pnpm/assert-store": "workspace:*",
+    "@pnpm/constants": "workspace:*",
+    "@pnpm/lockfile.fs": "workspace:*",
+    "@pnpm/logger": "workspace:*",
+    "@pnpm/package-store": "workspace:*",
+    "@pnpm/plugin-commands-script-runners": "workspace:*",
+    "@pnpm/prepare": "workspace:*",
+    "@pnpm/registry-mock": "catalog:",
+    "@pnpm/store.commands": "workspace:*",
+    "@types/archy": "catalog:",
+    "@types/ramda": "catalog:",
+    "@types/ssri": "catalog:",
+    "@zkochan/rimraf": "catalog:",
+    "execa": "catalog:",
+    "load-json-file": "catalog:",
+    "ssri": "catalog:",
+    "tempy": "catalog:"
+  },
+  "engines": {
+    "node": ">=22.13"
+  },
+  "jest": {
+    "preset": "@pnpm/jest-config/with-registry"
+  }
+}