CodeQL alert 159 (js/prototype-polluting-assignment) stayed open after
#11609 was merged: the barrier I added in convertEnginesRuntimeToDependencies
checked a re-aliased `key` variable, but the actual write went through the
original loop variable `runtimeName`. CodeQL's local data-flow analysis
followed `runtimeName` and didn't see the barrier.
Replace the inline barrier + dynamic assignment with `Object.defineProperty`,
which is the CodeQL-blessed sanitiser for this pattern. The dependency-map
write now produces a regular own data property even if a future entry in
`RUNTIME_NAMES` happens to match an inherited name like `__proto__`, so the
analyser is happy without depending on any pre-write check.
Resolves the 15 open alerts on https://github.com/pnpm/pnpm/security/code-scanning by addressing all four categories that CodeQL flagged.
### Prototype-polluting assignment (3 alerts, product code)
- `pkg-manifest/utils/src/convertEnginesRuntimeToDependencies.ts`: the inner write now dispatches over a literal `switch` on `runtimeName`, so the assignment is always keyed by `'node' | 'deno' | 'bun'`.
- `pkg-manifest/utils/src/updateProjectManifestObject.ts`: added an `isProtoPollutionKey` barrier at the top of the loop so `packageSpec.alias` can never reach the dynamic property write with `__proto__` / `constructor` / `prototype`.
- `installing/deps-installer/src/uninstall/removeDeps.ts`: the package list is filtered through `isProtoPollutionKey` once up front, and the dependency record is captured into a local before the loop.
### Polynomial ReDoS (2 alerts)
- `deps/inspection/list/src/renderDependentsTree.ts`: `replace(/\n+$/, '')` swapped for a constant-time `charCodeAt` trim.
- `resolving/npm-resolver/src/fetch.ts`: removed the super-linear-backtracking `semverRegex` and replaced it with an O(n) `stripTrailingSemverSuffix` that splits on the rightmost `@` and `semver.valid`s, with a digit-block fallback so `foo1.0.0`-style names still produce the existing "Did you mean foo?" hint.
### Bad code sanitization (8 alerts, test infrastructure)
- `__utils__/test-ipc-server/src/TestIpcServer.ts`: the `JSON.stringify(...).slice(1, -1)` smell at the source of all 8 test-file alerts is gone. Both `sendLineScript` and `generateSendStdinScript` now build the JS source with plain `JSON.stringify` and delegate shell wrapping to a new `wrapNodeEval` helper that escapes `\\` and `"` for the outer double-quoted shell argument.
### Incomplete sanitization (2 alerts, test file)
- `releasing/commands/test/publish/oidcProvenance.test.ts`: `.replace('/', '%2f')` → `.replaceAll(...)` on both flagged lines.
The `--latest` flag triggers the `installSome` code path, which built
`currentBareSpecifiers` via `getAllDependenciesFromManifest()` — a
function that excluded peer dependencies. The non-`--latest` path uses
`getWantedDependencies()`, which honors `autoInstallPeers` and includes
them. Pass `autoInstallPeers` through `getAllDependenciesFromManifest`
so both paths agree.
Closes#9900
Co-authored-by: Zoltan Kochan <z@kochan.io>
* chore: upgrade @typescript/native-preview to 7.0.0-dev.20260421.2
- Add explicit `types: ["node"]` to the shared tsconfig because tsgo
20260421 no longer auto-acquires `@types/*` from `node_modules`.
- Refactor test files to explicitly import jest globals (`describe`,
`it`, `test`, `expect`, `beforeEach`, etc.) from `@jest/globals`
instead of relying on `@types/jest` ambient declarations. Under the
new tsgo build, `import { jest } from '@jest/globals'` shadows the
ambient `jest` namespace, breaking `@types/jest`'s `declare var
describe: jest.Describe;` globals.
- Add `@jest/globals` to each package's devDependencies where tests
now import from it, and add `@types/node` to packages that need it
but were relying on hoisted resolution.
- Replace `fail()` calls with `throw new Error(...)` since `fail` is
no longer globally available.
* chore: fix remaining tsgo type-strictness errors
- Strip `as <PnpmType>` casts on objects passed to toMatchObject /
toStrictEqual / toEqual; @jest/globals rejects the typed objects
(which include AsymmetricMatchers) vs. the repo-specific type.
- Type `jest.fn<...>()` explicitly where the mock's signature matters
for toHaveBeenCalledWith.
- Replace `beforeEach(() => X)` with `beforeEach(() => { X })` so the
return value is void, as the stricter jest typing requires.
- Use `expect.objectContaining({...})` in one place where the full
expected object triggered stricter type resolution.
- Cast `prompt.mock.calls` arg through `as unknown as Record<...>[]`
for patch.test.ts's nested-array matchers.
- Fix off-by-one `<reference path>` in pnpm/test/getConfig.test.ts
that only surfaced now.
- Move `@jest/globals` from devDependencies to dependencies in the
two `__utils__` packages that import it from `src/`.
- Clean up unused imports from the @jest/globals migration.
* chore: address Copilot review on #11332
- Move misplaced `@jest/globals` imports to the top import block in
checkEngine, run.ts, and workspace/root-finder tests where the
script dropped them below executable code.
- Replace `try { await x(); throw new Error('should have thrown') } catch`
in bins/linker, lockfile/fs, and resolving/local-resolver tests with
`await expect(x()).rejects.toMatchObject({...})`. The old pattern
swallowed an unrelated `throw` if the under-test call silently
succeeded, which would fail on the catch-block assertion with a
misleading message.
Library packages had `prepublishOnly: pn compile`, which expands to
`tsgo --build && pn lint --fix`. During `pn release` that runs eslint
against ~150 packages for no benefit — the code has already been linted
in CI and the release flow's upfront compile has already built dist/.
Switch lib prepublishOnly to a bare `tsgo --build` so the safety-net
compile stays but the per-package eslint cost is gone.
## Summary
Adds an opt-in **pnpm agent** server that resolves dependencies server-side and streams only the files missing from the client's content-addressable store.
- **`@pnpm/agent.server`** — multi-process HTTP server (Node.js `cluster`) with SQLite-backed metadata and file caches
- **`@pnpm/agent.client`** — streams an NDJSON response, dispatches worker threads to fetch files while the server is still resolving
- **New config**: `agent` in `pnpm-workspace.yaml` (opt-in)
## How it works
1. Client reads integrity hashes from its local store index
2. Sends `POST /v1/install` with dependencies + store integrities
3. Server resolves the dependency tree using pnpm's `install({ lockfileOnly: true })`, with a SQLite-backed `PackageMetaCache` for fast repeat resolution
4. As each package resolves, a wrapped `storeController.requestPackage` looks up its files and immediately streams digests the client is missing (NDJSON `D` lines)
5. Client reads the stream line by line; digest batches fill up and dispatch worker threads to `POST /v1/files` — file downloads overlap with server-side resolution
6. After resolution, server sends index entries (`I` lines) and lockfile (`L` line)
7. Client writes index entries to store, then runs headless install with a wrapped `fetchPackage` that calls `readPkgFromCafs` with `verifyStoreIntegrity: false` (files are trusted from the agent)
8. `/v1/files` response is gzip-streamed (274MB → ~80MB) — server pipes through `createGzip`, worker pipes through `createGunzip`, parsing and writing files to CAFS as data arrives
## Performance
1351-package project, cold local store, warm server (localhost):
| Scenario | Time |
|----------|------|
| Vanilla pnpm install (cold OS cache) | ~48s |
| Vanilla pnpm install (warm OS cache) | ~34s |
| With pnpm agent (consistent) | **~33s** |
### Key optimizations
1. **SQLite metadata cache** — server-side resolution drops from ~3.4s to ~0.9s
2. **SQLite file store** — consistent read performance regardless of OS file cache state
3. **Streaming `/v1/install`** — file digests stream during resolution, downloads start before resolution finishes
4. **Gzip-streamed `/v1/files`** — whole-stream gzip (274MB → ~80MB), significant savings on remote servers
5. **Worker-thread streaming HTTP** — workers pipe gzip → parse → write to CAFS as data arrives, no buffering
6. **No rehashing** — server-provided digests used directly, skipping 33K SHA-512 computations
7. **No re-verification** — wrapped `fetchPackage` calls `readPkgFromCafs` with `verifyStoreIntegrity: false`
8. **Direct `writeFileSync` with `wx`** — no stat + temp + rename
9. **Pre-packed msgpack** — server sends raw store index buffers, client writes directly to SQLite
10. **WAL checkpoint** — ensures store index entries written by agent are visible to headless install's worker threads
## Usage
Start the server:
```bash
node agent/server/lib/bin.js
```
Configure in `pnpm-workspace.yaml`:
```yaml
agent: http://localhost:4873
```
* feat: add runtimeOnFail setting
Adds a `runtimeOnFail` config setting ('ignore' | 'warn' | 'error' |
'download') that overrides the `onFail` field on `devEngines.runtime`
and `engines.runtime` in the root project's package.json. This makes
it possible to opt into (or out of) runtime auto-download without
changing the project manifest.
* fix: skip runtime download when version is missing
Without a version, convertEnginesRuntimeToDependencies would write
`runtime:undefined` into the manifest. Warn and skip instead.
* feat: apply runtimeOnFail override during install
The config reader override only mutates the context's rootProjectManifest,
but installDeps reads the manifest fresh via tryReadProjectManifest and
findWorkspaceProjects. Apply the override there too so `runtimeOnFail`
actually affects what gets installed. Adds an e2e test covering both
download and ignore overrides through the real CLI bundle.
* fix: ensure PNPM_HOME/bin is in PATH during pnpm setup
When upgrading from old pnpm (global bin = PNPM_HOME) to new pnpm
(global bin = PNPM_HOME/bin), `pnpm setup` would fail because the
spawned `pnpm add -g` checks that the global bin dir is in PATH.
Prepend PNPM_HOME/bin to PATH in the spawned process env so the
check passes during the transition.
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
* chore: update pnpm to v11 beta 2
* chore: update pnpm to v11 beta 2
* chore: update pnpm to v11 beta 2
* chore: update pnpm to v11 beta 2
* fix: lint
* refactor: rename _-prefixed scripts to .-prefixed scripts
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
* fix: update root package.json to use .test instead of _test
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
* ci: update action-setup
---------
Co-authored-by: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
* chore: update all dependencies to latest versions
Update all outdated dependencies across the monorepo catalog and fix
breaking changes from major version bumps.
Notable updates:
- ESLint 9 → 10 (fix custom rule API, disable new no-useless-assignment)
- @stylistic/eslint-plugin 4 → 5 (auto-fixed indent changes)
- @cyclonedx/cyclonedx-library 9 → 10 (adapt to removed SPDX API)
- esbuild 0.25 → 0.27
- TypeScript 5.9.2 → 5.9.3
- Various @types packages, test utilities, and build tools
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
* fix: update unified/remark/mdast imports for v11/v4 API changes
Update imports in get-release-text for the new ESM named exports:
- mdast-util-to-string: default → { toString }
- unified: default → { unified }
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
* fix: resolve typecheck errors from dependency updates
- isexe v4: use named import { sync } instead of default export
- remark-parse/remark-stringify v11: add vfile as packageExtension
dependency so TypeScript can resolve type declarations
- get-release-text: remove unused @ts-expect-error directives
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
* fix: revert runtime dependency major version bumps
Revert major version bumps for runtime dependencies that are bundled
into pnpm to fix test failures where pnpm add silently fails:
- bin-links: keep ^5.0.0 (was ^6.0.0)
- cli-truncate: keep ^4.0.0 (was ^5.2.0)
- delay: keep ^6.0.0 (was ^7.0.0)
- filenamify: keep ^6.0.0 (was ^7.0.1)
- find-up: keep ^7.0.0 (was ^8.0.0)
- isexe: keep 2.0.0 (was 4.0.0)
- normalize-newline: keep 4.1.0 (was 5.0.0)
- p-queue: keep ^8.1.0 (was ^9.1.0)
- ps-list: keep ^8.1.1 (was ^9.0.0)
- string-length: keep ^6.0.0 (was ^7.0.1)
- symlink-dir: keep ^7.0.0 (was ^9.0.0)
- terminal-link: keep ^4.0.0 (was ^5.0.0)
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
* fix: restore runtime dependency major version bumps
Re-apply all runtime dependency major version bumps that were
previously reverted. All packages maintain their default exports
except isexe v4 which needs named imports.
Updated runtime deps:
- bin-links: ^5.0.0 → ^6.0.0
- cli-truncate: ^4.0.0 → ^5.2.0
- delay: ^6.0.0 → ^7.0.0
- filenamify: ^6.0.0 → ^7.0.1
- find-up: ^7.0.0 → ^8.0.0
- isexe: 2.0.0 → 4.0.0 (fix: use named import { sync })
- normalize-newline: 4.1.0 → 5.0.0
- p-queue: ^8.1.0 → ^9.1.0
- ps-list: ^8.1.1 → ^9.0.0
- string-length: ^6.0.0 → ^7.0.1
- symlink-dir: ^7.0.0 → ^9.0.0
- terminal-link: ^4.0.0 → ^5.0.0
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
* fix: revert tempy to 3.0.0 to fix bundle hang
tempy 3.2.0 pulls in temp-dir 3.0.0 which uses async fs.realpath()
inside its module init. When bundled by esbuild into the __esm lazy
init pattern, this causes a deadlock during module initialization,
making the pnpm binary hang silently on startup.
Keeping tempy at 3.0.0 which uses temp-dir 2.x (sync fs.realpathSync).
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
* docs: add comment explaining why tempy cannot be upgraded
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
* fix: revert nock to 13.3.4 for node-fetch compatibility
nock 14 changed its HTTP interception mechanism in a way that doesn't
properly intercept node-fetch requests, causing audit tests to hang
waiting for responses that are never intercepted.
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
* docs: add comment explaining why nock cannot be upgraded
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
* fix: update symlink-dir imports for v10 ESM named exports
symlink-dir v10 removed the default export and switched to named
exports: { symlinkDir, symlinkDirSync }.
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
* fix: revert @typescript/native-preview to working version
Newer tsgo dev builds (>= 20260318) have a regression where
@types/node cannot be resolved, breaking all node built-in types.
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
* fix: vulnerabilities
* fix: align comment indentation in runLifecycleHook
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
* fix: pin msgpackr to 1.11.8 for TypeScript 5.9 compatibility
msgpackr 1.11.9 has broken type definitions that use Iterable/Iterator
without required type arguments, causing compile errors with TS 5.9.
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
---------
Co-authored-by: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
* chore: reduce noisy warnings in test output
- Suppress ExperimentalWarning and DEP0169 via --disable-warning in NODE_OPTIONS
- Fix MaxListenersExceededWarning by raising limit in StoreIndex when adding exit listeners
- Update meta-updater to generate the new _test scripts
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
* chore: stop streaming pnpm subprocess output during CLI tests
Buffer stdout/stderr from execPnpm instead of writing to the parent
process in real time. Output is still included in the error message on
failure.
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
* chore: pipe all subprocess output in CLI tests
Use stdio: 'pipe' for all pnpm/pnpx spawn helpers so subprocess output
is buffered instead of printed. Output is still included in error
messages on failure.
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
* fix: remove duplicate @pnpm/installing.env-installer in pnpm/package.json
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
* chore: use pipe stdio in dlx and errorHandler tests
Replace stdio: 'inherit' and [null, 'pipe', 'inherit'] with 'pipe' to
prevent subprocess output from leaking into test output.
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
* fix: skip maxListeners adjustment when set to unlimited (0)
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
---------
Co-authored-by: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
* refactor: rename workspace.sort-packages and workspace.pkgs-graph
- workspace.sort-packages -> workspace.projects-sorter
- workspace.pkgs-graph -> workspace.projects-graph
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
* refactor: rename packages/ to core/ and pkg-manifest.read-package-json to reader
- Rename packages/ directory to core/ for clarity
- Rename pkg-manifest/read-package-json to pkg-manifest/reader (@pnpm/pkg-manifest.reader)
- Update all tsconfig, package.json, and lockfile references
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
* refactor: consolidate runtime resolvers under engine/runtime domain
- Remove unused @pnpm/engine.runtime.node.fetcher package
- Rename engine/runtime/node.resolver to node-resolver (dash convention)
- Move resolving/bun-resolver to engine/runtime/bun-resolver
- Move resolving/deno-resolver to engine/runtime/deno-resolver
- Update all package names, tsconfig paths, and lockfile references
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
* chore: update lockfile after removing node.fetcher
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
* fix: sort tsconfig references and package.json deps alphabetically
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
* fix: auto-fix import sorting
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
* fix: update __typings__ paths in tsconfig.lint.json for moved resolvers
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
* fix: remove deno-resolver from deps of bun-resolver
---------
Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>
