When a project transitions from non-GVS to GVS mode, hoisted symlinks at
`node_modules/.pnpm/node_modules/<dep>` still pointed into
`node_modules/.pnpm/<depPath>/node_modules/<dep>`. The
`symlinkHoistedDependency` function only checked `isSubdir(virtualStoreDir, ...)`
— with GVS active, `virtualStoreDir` is `storeDir/links`, so these old symlinks
were classified as "external" and silently skipped.
Added `internalPnpmDir` (derived from `path.dirname(privateHoistedModulesDir)`)
as a second check. Symlinks under `node_modules/.pnpm/` are now recognized as
pnpm-internal and correctly replaced, matching the pattern in `safeIsInnerLink`.
The broader TypeScript type inference breakage (#9739) also has an architectural
dimension: when TypeScript follows a symlink to storeDir/links/<hash>/, Node's
module resolution walk-up never reaches node_modules/. This is the same root
cause as #12437 (packages from links store can't resolve transitive deps) and
requires a separate architectural fix.
Closespnpm/pnpm#9739
---------
Co-authored-by: Zoltan Kochan <z@kochan.io>
